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view on githubraw file Latest commit 8916dab9 on 2022-03-21 14:59:06 UTC
1d947889e4 Oliv*0001 .. include:: ../defs.hrst
                0002 
                0003 Exudation
                0004 ^^^^^^^^^
                0005 
                0006 If :varlink:`DARWIN_ALLOW_EXUDE` is defined, an additional per-element loss
                0007 term is introduced, e.g.,
                0008 
                0009 .. math:: \partial_tp_j = \dots - E^{\mathrm{P}}_j
                0010 
                0011 with
                0012 
                0013 .. math:: E^{\mathrm{P}}_j = \kappa^{\op{exc}}_{{\mathrm{P}}\,j} ({c}_j - {c}_j^{\min}) Q^{\mathrm{P}}_j
                0014 
                0015 and fed into organic matter pools, e.g.,
                0016 
faa67d1773 Oliv*0017 .. math:: \partial_t\op{DOP}= \dots + \sum_j (1 - f^{\exp\op{exude}}_j) E^{\mathrm{P}}_j
1d947889e4 Oliv*0018 
                0019 and
                0020 
faa67d1773 Oliv*0021 .. math:: \partial_t\op{POP}= \dots + \sum_j f^{\exp\op{exude}}_j E^{\mathrm{P}}_j
1d947889e4 Oliv*0022 
                0023 (Maybe should NOT use :math:`{c}_j^{\min}` in this case, or have a
                0024 separate one for each quota?)
                0025 
faa67d1773 Oliv*0026 .. csv-table:: Exudation parameters
                0027    :delim: &
                0028    :widths: 13,20,17,15,15,20
                0029    :class: longtable
                0030    :header: Trait, Param, Symbol, Default, Units, Description
                0031 
                0032    :varlink:`kexcc`           & :varlink:`a_kexcC`           & :math:`\kappa^{\op{exc}}_{\op{C} j}`  & 0·V\ :sup:`-0.33`         & s\ :sup:`-1` & exudation rate for carbon
                0033    :varlink:`kexcn`           & :varlink:`a_kexcN`           & :math:`\kappa^{\op{exc}}_{\op{N} j}`  & 0·V\ :sup:`-0.33`         & s\ :sup:`-1` & exudation rate for nitrogen
                0034    :varlink:`kexcp`           & :varlink:`a_kexcP`           & :math:`\kappa^{\op{exc}}_{\op{P} j}`  & 0.024/day·V\ :sup:`-0.33` & s\ :sup:`-1` & exudation rate for phosphorus
                0035    :varlink:`kexcfe`          & :varlink:`a_kexcFe`          & :math:`\kappa^{\op{exc}}_{\op{Fe} j}` & 0.0/day                   & s\ :sup:`-1` & exudation rate for iron
                0036    :varlink:`kexcsi`          & :varlink:`a_kexcSi`          & :math:`\kappa^{\op{exc}}_{\op{Si} j}` & 0.0/day                   & s\ :sup:`-1` & exudation rate for silica
                0037    :varlink:`ExportFracExude` & :varlink:`a_ExportFracExude` & :math:`f^{\op{exp}\op{exude}}_j`      & UNINIT                    &              & fraction of exudation to POM
8916dab93b Oliv*0038