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File indexing completed on 2025-12-02 20:42:54 UTC
view on githubraw file Latest commit a092808e on 2025-12-02 20:09:45 UTC8fbfd1f382 Oliv*0001 #ifdef ALLOW_DARWIN 0002 0003 CBOP 0004 C !ROUTINE: DARWIN_TRAITS.h 0005 C !INTERFACE: 0006 C #include DARWIN_TRAITS.h 0007 0008 C !DESCRIPTION: 0009 C Contains run-time parameters for the darwin package 0010 C the parameters in this file are traits 0011 C 0012 C Requires: DARWIN_SIZE.h 0013 5910c7e5d2 Oliv*0014 C-- COMMON /DARWIN_TRAITS_i/ Per-plankton traits (generated, maybe overwritten by data.traits) 0015 C isPhoto :: 1: does photosynthesis, 0: not 0016 C bactType :: 1: particle associated, 2: free living bacteria, 0: not bacteria 0017 C isAerobic :: 1: is aerobic bacteria (also set bactType), 0: not 0018 C isDenit :: 1: is dentrifying bacteria (also set (bactType), 0: not 0019 C hasSi :: 1: uses silica (Diatom), 0: not 0020 C hasPIC :: 1: calcifying, 0: set R_PICPOC to zero 0021 C diazo :: 1: use molecular instead of mineral nitrogen, 0: not 0022 C useNH4 :: 1: can use ammonia, 0: not 0023 C useNO2 :: 1: can use nitrite, 0: not 0024 C useNO3 :: 1: can use nitrate, 0: not 0025 C combNO :: 1: combined nitrite/nitrate limitation, 0: not 0026 C isPrey :: 1: can be grazed, 0: not 0027 C isPred :: 1: can graze, 0: not 0028 C tempMort :: 1: mortality is temperature dependent, 0: turn dependence off 0029 C tempMort2 :: 1: quadratic mortality is temperature dependent, 0: turn dependence off 0030 C tempGraz :: 1: grazing is temperature dependent, 0: turn dependence off 8fbfd1f382 Oliv*0031 COMMON /DARWIN_TRAITS_i/ 0032 & isPhoto, 0033 & bactType, 0034 & isAerobic, 0035 & isDenit, 0036 & hasSi, 0037 & hasPIC, 0038 & diazo, 0039 & useNH4, 0040 & useNO2, 0041 & useNO3, 0042 & combNO, 0043 & isPrey, 0044 & isPred, 0045 & tempMort, 14aae40637 Oliv*0046 & tempMort2, 0047 & tempGraz 8fbfd1f382 Oliv*0048 INTEGER isPhoto(nplank) 0049 INTEGER bactType(nplank) 0050 INTEGER isAerobic(nplank) 0051 INTEGER isDenit(nplank) 0052 INTEGER hasSi(nplank) 0053 INTEGER hasPIC(nplank) 0054 INTEGER diazo(nplank) 0055 INTEGER useNH4(nplank) 0056 INTEGER useNO2(nplank) 0057 INTEGER useNO3(nplank) 0058 INTEGER combNO(nplank) 0059 INTEGER isPrey(nplank) 0060 INTEGER isPred(nplank) 0061 INTEGER tempMort(nplank) 0062 INTEGER tempMort2(nplank) 14aae40637 Oliv*0063 INTEGER tempGraz(nplank) 5910c7e5d2 Oliv*0064 0065 C-- COMMON /DARWIN_TRAITS_r/ Per-plankton traits (generated, maybe overwritten by data.traits) 0066 C Xmin :: [mmol C m^-3] minimum abundance for mortality, respiration and exudation 0067 C amminhib :: [(mmol N m^-3)^-1] coefficient for NH4 inhibition of NO uptake 0068 C acclimtimescl :: [s^-1] rate of chlorophyll acclimation 0069 C 0070 C mort :: [s^-1] linear mortality rate 0071 C mort2 :: [(mmol C m^-3)^-1 s^-1] quadratic mortality coefficient 0072 C ExportFracMort :: [] fraction of linear mortality to POM 0073 C ExportFracMort2 :: [] fraction of quadratic mortality to POM 0074 C ExportFracExude :: [] fraction of exudation to POM c7b6c66d45 Oliv*0075 C FracExudeC :: [] fraction of excess C exuded 5910c7e5d2 Oliv*0076 C 0077 C- temperature dependence: 0078 C phytoTempCoeff :: [] see :numref:`pkg_darwin_temperature_params` 0079 C phytoTempExp1 :: [exp(1/degrees C)] see :numref:`pkg_darwin_temperature_params` 09b16dd232 Oliv*0080 C phytoTempAe :: [1/degrees C] see :numref:`pkg_darwin_temperature_params` 5910c7e5d2 Oliv*0081 C phytoTempExp2 :: [] see :numref:`pkg_darwin_temperature_params` 0082 C phytoTempOptimum :: [degrees C] see :numref:`pkg_darwin_temperature_params` 0083 C phytoDecayPower :: [] see :numref:`pkg_darwin_temperature_params` 09b16dd232 Oliv*0084 C hetTempAe :: [1/degrees C] see :numref:`pkg_darwin_temperature_params` 0085 C hetTempExp2 :: [] see :numref:`pkg_darwin_temperature_params` 0086 C hetTempOptimum :: [degrees C] see :numref:`pkg_darwin_temperature_params` 0087 C hetDecayPower :: [] see :numref:`pkg_darwin_temperature_params` 0088 C grazTempAe :: [1/degrees C] see :numref:`pkg_darwin_temperature_params` 0089 C grazTempExp2 :: [] see :numref:`pkg_darwin_temperature_params` 0090 C grazTempOptimum :: [degrees C] see :numref:`pkg_darwin_temperature_params` 0091 C grazDecayPower :: [] see :numref:`pkg_darwin_temperature_params` 5910c7e5d2 Oliv*0092 C 0093 C R_NC :: [mmol N (mmol C)^-1] nitrogen-carbon ratio (not used with DARWIN_ALLOW_NQUOTA) 0094 C R_PC :: [mmol P (mmol C)^-1] phosphorus-carbon ratio (not used with DARWIN_ALLOW_PQUOTA) 0095 C R_SiC :: [mmol Si (mmol C)^-1] silica-carbon ratio (not used with DARWIN_ALLOW_SIQUOTA) 0096 C R_FeC :: [mmol Fe (mmol C)^-1] iron-carbon ratio (not used with DARWIN_ALLOW_FEQUOTA) 0097 C R_ChlC :: [mg Chl (mmol C)^-1] chlorophyll-carbon ratio (not used with DARWIN_ALLOW_CHLQUOTA) 0098 C R_PICPOC :: [mmol PIC (mmol POC)^-1] inorganic-organic carbon ratio 0099 C 0100 C biosink :: [m s^-1] sinking velocity (positive downwards) 0101 C bioswim :: [m s^-1] upward swimming velocity (positive upwards) 5e7acb36b1 daat*0102 C bioswimDVM :: [m s^-1] swimming speed for diel vertically migrating plankton (pos. upwards) 5910c7e5d2 Oliv*0103 C 0104 C respRate :: [s^-1] respiration rate 0105 C PCmax :: [s^-1] maximum carbon-specific growth rate 0106 C 0107 C Qnmax :: [mmol N (mmol C)^-1] maximum nitrogen quota (only with DARWIN_ALLOW_NQUOTA) 0108 C Qnmin :: [mmol N (mmol C)^-1] minimum nitrogen quota (only with DARWIN_ALLOW_NQUOTA) 0109 C Qpmax :: [mmol P (mmol C)^-1] maximum phosphorus quota (only with DARWIN_ALLOW_PQUOTA) 0110 C Qpmin :: [mmol P (mmol C)^-1] minimum phosphorus quota (only with DARWIN_ALLOW_PQUOTA) 0111 C Qsimax :: [mmol Si (mmol C)^-1] maximum silica quota (only with DARWIN_ALLOW_SIQUOTA) 0112 C Qsimin :: [mmol Si (mmol C)^-1] minimum silica quota (only with DARWIN_ALLOW_SIQUOTA) 0113 C Qfemax :: [mmol Fe (mmol C)^-1] maximum iron quota (only with DARWIN_ALLOW_FEQUOTA) 0114 C Qfemin :: [mmol Fe (mmol C)^-1] minimum iron quota (only with DARWIN_ALLOW_FEQUOTA) 0115 C 0116 C VmaxNH4 :: [mmol N (mmol C)^-1 s^-1] maximum ammonia uptake rate (only with DARWIN_ALLOW_NQUOTA) 0117 C VmaxNO2 :: [mmol N (mmol C)^-1 s^-1] maximum nitrite uptake rate (only with DARWIN_ALLOW_NQUOTA) 0118 C VmaxNO3 :: [mmol N (mmol C)^-1 s^-1] maximum nitrate uptake rate (only with DARWIN_ALLOW_NQUOTA) 0119 C VmaxN :: [mmol N (mmol C)^-1 s^-1] maximum nitrogen uptake rate for diazotrophs (only with DARWIN_ALLOW_NQUOTA) 0120 C :: has to be >= vmaxNO3 + vmaxNO2 + vmaxNH4 0121 C VmaxPO4 :: [mmol P (mmol C)^-1 s^-1] maximum phosphate uptake rate (only with DARWIN_ALLOW_PQUOTA) 0122 C VmaxSiO2 :: [mmol Si (mmol C)^-1 s^-1] maximum silica uptake rate (only with DARWIN_ALLOW_SIQUOTA) 0123 C VmaxFeT :: [mmol Fe (mmol C)^-1 s^-1] maximum iron uptake rate (only with DARWIN_ALLOW_FEQUOTA) 0124 C 0125 C ksatNH4 :: [mmol N m^-3] half-saturation conc. for ammonia uptake/limitation 0126 C ksatNO2 :: [mmol N m^-3] half-saturation conc. for nitrite uptake/limitation 0127 C ksatNO3 :: [mmol N m^-3] half-saturation conc. for nitrate uptake/limitation 0128 C ksatPO4 :: [mmol P m^-3] half-saturation conc. for phosphate uptake/limitation 0129 C ksatSiO2 :: [mmol Si m^-3] half-saturation conc. for silica uptake/limitation 0130 C ksatFeT :: [mmol Fe m^-3] half-saturation conc. for iron uptake/limitation 0131 C 0132 C kexcc :: [s^-1] exudation rate for carbon 0133 C kexcn :: [s^-1] exudation rate for nitrogen 0134 C kexcp :: [s^-1] exudation rate for phosphorus 0135 C kexcsi :: [s^-1] exudation rate for silica 0136 C kexcfe :: [s^-1] exudation rate for iron 0137 C 0138 C- Geider 0139 C inhibGeider :: [] photo-inhibition coefficient for Geider growth 0140 C- not Geider 0141 C ksatPAR :: [(uEin m^-2 s^-1)^-1] saturation coefficient for PAR (w/o GEIDER) 0142 C kinhPAR :: [(uEin m^-2 s^-1)^-1] inhibition coefficient for PAR (w/o GEIDER) 0143 C- always defined 0144 C mQyield :: [mmol C (uEin)^-1] maximum quantum yield 0145 C chl2cmax :: [mg Chl (mmol C)^-1] maximum Chlorophyll-carbon ratio 0146 C 0147 C- Grazing 0148 C grazemax :: [s^-1] maximum grazing rate 0149 C kgrazesat :: [mmol C m^-3] grazing half-saturation concentration 0150 C palat :: [] palatability matrix 0151 C asseff :: [] assimilation efficiency matrix 0152 C ExportFracPreyPred :: [] fraction of unassimilated prey becoming particulate organic matter 0153 C 0154 C- Bacteria 0155 C yield :: [] bacterial growth yield for all organic matter 0156 C yieldO2 :: [] bacterial growth yield for oxygen 0157 C yieldNO3 :: [] bacterial growth yield for nitrate 0158 C ksatPON :: [mmol N m^-3] half-saturation of PON for bacterial growth 0159 C ksatPOC :: [mmol C m^-3] half-saturation of POC for bacterial growth 0160 C ksatPOP :: [mmol P m^-3] half-saturation of POP for bacterial growth 0161 C ksatPOFe :: [mmol Fe m^-3] half-saturation of POFe for bacterial growth 0162 C ksatDON :: [mmol N m^-3] half-saturation of DON for bacterial growth 0163 C ksatDOC :: [mmol C m^-3] half-saturation of DOC for bacterial growth 0164 C ksatDOP :: [mmol P m^-3] half-saturation of DOP for bacterial growth 0165 C ksatDOFe :: [mmol Fe m^-3] half-saturation of DOFe for bacterial growth 5e7acb36b1 daat*0166 C- PAR preference 0167 C PARpref :: [uEin m^-2 s^-1] preferred PAR isolume for determining DVM 0168 C- Light-mediated mortality for DVM 0169 C mortmaxDVM :: [s^-1] maximum mortality rate related to PAR for DVM 0170 C ksatDVM :: [mmol C m^-3] half saturation for DVM mortality 0171 C ksatPARDVM :: [uEin m^-2 s^-1] half sat for light limitation for DVM 0172 C fracPARmort :: [] fraction of mortality from light-dependent mortality 0173 C ExportFracDVM :: [] fraction of light-dep mortality from DVM to POM a092808e6b shlo*0174 C 0175 C- MACROMOLECULAR_GROWTH parameters 0176 C Y_CP_Plip :: [molC molP^-1] C/P molar ratio of thylacoid membrane 0177 C Y_CN_protein :: [molC molN^-1] C/N molar ratio in protein 0178 C Y_NC_chl :: [molN molC^-1] N/C molar ratio in chlorophyll 0179 C Y_CN_cyano :: [molC molN^-1] C/N molar ratio of cyanophycin 0180 C Y_PN_nucacid :: [molP molN^-1] P/N molar ratio of RNA 0181 C Y_CN_DNA :: [molC molN^-1] C/N molar ratio of DNA 0182 C Y_CN_RNA :: [molC molN^-1] C/N molar ratio of RNA 0183 C Y_THY_P :: [(molP)/(molC in chl)^-1] the stoichiometric ratio for cell phosphorus in thylakoid membrane to chlorophyll 0184 C Y_FeN_photo :: [molFe mol N^-1] Fe/N ratio in photosystem iron 0185 C ECo2Prod :: [dimensionless] CO2 production ratio 0186 C maintConsum :: [s^-1] maintenance carbohydrate consumption 0187 C VI_max :: [molC (molC in Chl)^-1 s^-1] carbon fixing rate 0188 C A_I :: [umol^-1 m2 s] coefficient characterizing the absorption cross section 0189 C QC_other :: [molC molC^-1] essential carbon (lipid membrane, etc.) 0190 C QC_pro_other :: [molC molC^-1] 0191 C QP_other :: [molP molC^-1] constant part of phosphorus 0192 C QP_RNA_min :: [molP molC^-1] 0193 C QC_DNA :: [molC molC^-1] constant part of DNA in carbon 0194 C QN_pro_other :: [molN molC^-1] 0195 C QN_RNA_min :: [molN molC^-1] constant part of RNA in nitrogen 0196 C QC_RNA_min :: [molN molC^-1] constant part of RNA in carbon 0197 C QN_DNA :: [molN molC^-1] DNA in nitrogen 0198 C QP_DNA :: [molP molC^-1] DNA in phosphorous 0199 C QN_sto_max :: [molN molC^-1] maximum nitrogen storage 0200 C Qp_max :: [molP molC^-1] maximum phosphorus quota 0201 C Qfe_max :: [molFe molC^-1] maximum iron quota 0202 C A_pho :: [(molC)/(molC in chl)^-1] A constant of proportionalty 0203 C A_bio :: [molC molC^-1 s] constant for variable part of biosynthesis protein 0204 C AP_RNA :: [molP molC^-1 s] constant for Variable part of RNA 0205 C AN_RNA :: [molN molN^-1 s] constant for Variable part of RNA 0206 C A_thy :: [molC (molC in chl)^-1] 0207 C Sf :: [unitless] enhancement of photosynthesis due to size 0208 C QC_const :: [molC molC^-1] constant portion of the cell 0209 C VI_min :: [molC (molC in Chl)^-1 s^-1] minimum photosynthesis rate 0210 C QC_chlMax :: [molC molC^-1] maximum chlorophyll concentration at minimum light 0211 C QnNoChl :: [molN molC^-1] minimum QN at zero growth rate 0212 C QpNoChl :: [molP molC^-1] minimum QP at zero growth rate 0213 C QfeNoChl :: [molFe molC^-1] minimum QFe at zero growth rate 8fbfd1f382 Oliv*0214 COMMON /DARWIN_TRAITS_r/ 0215 & Xmin, 0216 & amminhib, 0217 & acclimtimescl, 0218 & mort, 0219 & mort2, 0220 & ExportFracMort, 0221 & ExportFracMort2, 0222 & ExportFracExude, c7b6c66d45 Oliv*0223 & FracExudeC, 8fbfd1f382 Oliv*0224 & phytoTempCoeff, 0225 & phytoTempExp1, 09b16dd232 Oliv*0226 & phytoTempAe, 8fbfd1f382 Oliv*0227 & phytoTempExp2, 0228 & phytoTempOptimum, 0229 & phytoDecayPower, 09b16dd232 Oliv*0230 & hetTempAe, 0231 & hetTempExp2, 0232 & hetTempOptimum, 0233 & hetDecayPower, 0234 & grazTempAe, 0235 & grazTempExp2, 0236 & grazTempOptimum, 0237 & grazDecayPower, 8fbfd1f382 Oliv*0238 & R_NC, 0239 & R_PC, 0240 & R_SiC, 0241 & R_FeC, 0242 & R_ChlC, 0243 & R_PICPOC, 0244 & biosink, 0245 & bioswim, 5e7acb36b1 daat*0246 & bioswimDVM, 8fbfd1f382 Oliv*0247 & respRate, 0248 & PCmax, 0249 & Qnmax, 0250 & Qnmin, 0251 & Qpmax, 0252 & Qpmin, 0253 & Qsimax, 0254 & Qsimin, 0255 & Qfemax, 0256 & Qfemin, 0257 & VmaxNH4, 0258 & VmaxNO2, 0259 & VmaxNO3, 0260 & VmaxN, 0261 & VmaxPO4, 0262 & VmaxSiO2, 0263 & VmaxFeT, 0264 & ksatNH4, 0265 & ksatNO2, 0266 & ksatNO3, 0267 & ksatPO4, 0268 & ksatSiO2, 0269 & ksatFeT, a092808e6b shlo*0270 & hillnumDIN, 0271 & hillnumPO4, 0272 & hillnumFeT, 0273 & hillnumSiO2, 8fbfd1f382 Oliv*0274 & kexcc, 0275 & kexcn, 0276 & kexcp, 0277 & kexcsi, 0278 & kexcfe, 0279 #ifdef DARWIN_ALLOW_GEIDER 0280 & inhibGeider, 0281 #else 0282 & ksatPAR, 0283 & kinhPAR, 0284 #endif 0285 & mQyield, 0286 & chl2cmax, 0287 & grazemax, 0288 & kgrazesat, 0289 & palat, 0290 & asseff, 0291 & ExportFracPreyPred, 0292 & yield, 0293 & yieldO2, 0294 & yieldNO3, 0295 & ksatPON, 0296 & ksatPOC, 0297 & ksatPOP, 0298 & ksatPOFe, 0299 & ksatDON, 0300 & ksatDOC, 0301 & ksatDOP, 5e7acb36b1 daat*0302 & ksatDOFe, 0303 & PARpref, 0304 & mortmaxDVM, 0305 & ksatDVM, 0306 & ksatPARDVM, 0307 & fracPARmort, 0308 & ExportFracDVM a092808e6b shlo*0309 #ifdef DARWIN_MACROMOLECULAR_GROWTH 0310 & ,Y_CN_protein, 0311 & Y_CP_Plip, 0312 & Y_NC_chl, 0313 & Y_CN_cyano, 0314 & Y_PN_nucacid, 0315 & Y_CN_DNA, 0316 & Y_CN_RNA, 0317 & Y_THY_P, 0318 & Y_FeN_photo, 0319 & ECo2Prod, 0320 & maintConsum, 0321 & VI_max, 0322 & A_I, 0323 & QC_other, 0324 & QC_pro_other, 0325 & QP_other, 0326 & QP_RNA_min, 0327 & QC_DNA, 0328 & QN_pro_other, 0329 & QN_RNA_min, 0330 & QC_RNA_min, 0331 & QN_DNA, 0332 & QP_DNA, 0333 & QN_sto_max, 0334 & Qp_max, 0335 & Qfe_max, 0336 & A_pho, 0337 & A_bio, 0338 & AP_RNA, 0339 & AN_RNA, 0340 & A_thy, 0341 & Sf, 0342 & VI_min, 0343 & QC_chlMax, 0344 & QnNoChl, 0345 & QpNoChl, 0346 & QfeNoChl, 0347 & QC_const 0348 #endif 8fbfd1f382 Oliv*0349 _RL Xmin(nplank) 0350 _RL amminhib(nplank) 0351 _RL acclimtimescl(nplank) 0352 _RL mort(nplank) 0353 _RL mort2(nplank) 0354 _RL ExportFracMort(nplank) 0355 _RL ExportFracMort2(nplank) 0356 _RL ExportFracExude(nplank) c7b6c66d45 Oliv*0357 _RL FracExudeC(nplank) 8fbfd1f382 Oliv*0358 _RL phytoTempCoeff(nplank) 0359 _RL phytoTempExp1(nplank) 09b16dd232 Oliv*0360 _RL phytoTempAe(nplank) 8fbfd1f382 Oliv*0361 _RL phytoTempExp2(nplank) 0362 _RL phytoTempOptimum(nplank) 0363 _RL phytoDecayPower(nplank) 09b16dd232 Oliv*0364 _RL hetTempAe(nplank) 0365 _RL hetTempExp2(nplank) 0366 _RL hetTempOptimum(nplank) 0367 _RL hetDecayPower(nplank) 0368 _RL grazTempAe(nplank) 0369 _RL grazTempExp2(nplank) 0370 _RL grazTempOptimum(nplank) 0371 _RL grazDecayPower(nplank) 8fbfd1f382 Oliv*0372 _RL R_NC(nplank) 0373 _RL R_PC(nplank) 0374 _RL R_SiC(nplank) 0375 _RL R_FeC(nplank) 0376 _RL R_ChlC(nplank) 0377 _RL R_PICPOC(nplank) 0378 _RL biosink(nplank) 0379 _RL bioswim(nplank) 5e7acb36b1 daat*0380 _RL bioswimDVM(nplank) 8fbfd1f382 Oliv*0381 _RL respRate(nplank) 0382 _RL PCmax(nplank) 0383 _RL Qnmax(nplank) 0384 _RL Qnmin(nplank) 0385 _RL Qpmax(nplank) 0386 _RL Qpmin(nplank) 0387 _RL Qsimax(nplank) 0388 _RL Qsimin(nplank) 0389 _RL Qfemax(nplank) 0390 _RL Qfemin(nplank) 0391 _RL VmaxNH4(nplank) 0392 _RL VmaxNO2(nplank) 0393 _RL VmaxNO3(nplank) 0394 _RL VmaxN(nplank) 0395 _RL VmaxPO4(nplank) 0396 _RL VmaxSiO2(nplank) 0397 _RL VmaxFeT(nplank) 0398 _RL ksatNH4(nplank) 0399 _RL ksatNO2(nplank) 0400 _RL ksatNO3(nplank) 0401 _RL ksatPO4(nplank) 0402 _RL ksatSiO2(nplank) 0403 _RL ksatFeT(nplank) a092808e6b shlo*0404 _RL hillnumDIN(nplank) 0405 _RL hillnumPO4(nplank) 0406 _RL hillnumFeT(nplank) 0407 _RL hillnumSiO2(nplank) 8fbfd1f382 Oliv*0408 _RL kexcc(nplank) 0409 _RL kexcn(nplank) 0410 _RL kexcp(nplank) 0411 _RL kexcsi(nplank) 0412 _RL kexcfe(nplank) 0413 #ifdef DARWIN_ALLOW_GEIDER 0414 _RL inhibGeider(nplank) 0415 #else 0416 _RL ksatPAR(nplank) 0417 _RL kinhPAR(nplank) 0418 #endif 0419 _RL mQyield(nplank) 0420 _RL chl2cmax(nplank) 0421 _RL grazemax(nplank) 0422 _RL kgrazesat(nplank) 0423 _RL palat(nplank,nplank) 0424 _RL asseff(nplank,nplank) 0425 _RL ExportFracPreyPred(nplank,nplank) 0426 _RL yield(nplank) 0427 _RL yieldO2(nplank) 0428 _RL yieldNO3(nplank) 0429 _RL ksatPON(nplank) 0430 _RL ksatPOC(nplank) 0431 _RL ksatPOP(nplank) 0432 _RL ksatPOFe(nplank) 0433 _RL ksatDON(nplank) 0434 _RL ksatDOC(nplank) 0435 _RL ksatDOP(nplank) 0436 _RL ksatDOFe(nplank) 5e7acb36b1 daat*0437 _RL PARpref(nplank) 0438 _RL mortmaxDVM(nplank) 0439 _RL ksatDVM(nplank) 0440 _RL ksatPARDVM(nplank) 0441 _RL fracPARmort(nplank) 0442 _RL ExportFracDVM(nplank) a092808e6b shlo*0443 #ifdef DARWIN_MACROMOLECULAR_GROWTH 0444 _RL Y_CN_protein(nplank) 0445 _RL Y_CP_Plip(nplank) 0446 _RL Y_NC_chl(nplank) 0447 _RL Y_CN_cyano(nplank) 0448 _RL Y_PN_nucacid(nplank) 0449 _RL Y_CN_DNA(nplank) 0450 _RL Y_CN_RNA(nplank) 0451 _RL Y_THY_P(nplank) 0452 _RL Y_FeN_photo(nplank) 0453 _RL ECo2Prod(nplank) 0454 _RL maintConsum(nplank) 0455 _RL VI_max(nplank) 0456 _RL A_I(nplank) 0457 _RL QC_other(nplank) 0458 _RL QC_pro_other(nplank) 0459 _RL QP_other(nplank) 0460 _RL QP_RNA_min(nplank) 0461 _RL QC_DNA(nplank) 0462 _RL QN_pro_other(nplank) 0463 _RL QN_RNA_min(nplank) 0464 _RL QC_RNA_min(nplank) 0465 _RL QN_DNA(nplank) 0466 _RL QP_DNA(nplank) 0467 _RL QN_sto_max(nplank) 0468 _RL Qp_max(nplank) 0469 _RL Qfe_max(nplank) 0470 _RL A_pho(nplank) 0471 _RL A_bio(nplank) 0472 _RL AP_RNA(nplank) 0473 _RL AN_RNA(nplank) 0474 _RL A_thy(nplank) 0475 _RL Sf(nplank) 0476 _RL VI_min(nplank) 0477 _RL QC_chlMax(nplank) 0478 _RL QnNoChl(nplank) 0479 _RL QpNoChl(nplank) 0480 _RL QfeNoChl(nplank) 0481 _RL QC_const(nplank) 0482 #endif 8fbfd1f382 Oliv*0483 5910c7e5d2 Oliv*0484 C-- COMMON /DARWIN_DEPENDENT_TRAITS_i/ Dependent and constant (not read-in) parameters 0485 C group :: which group this type belongs to 0486 C igroup :: index within group 0487 C 0488 C- Radtrans only: 0489 C aptype :: optical type (for absorption/scattering spectra) 8fbfd1f382 Oliv*0490 COMMON /DARWIN_DEPENDENT_TRAITS_i/ 0491 #ifdef ALLOW_RADTRANS 0492 & aptype, 0493 #endif 0494 & group, 0495 & igroup 0496 #ifdef ALLOW_RADTRANS 0497 INTEGER aptype(nplank) 0498 #endif 0499 INTEGER group(nplank) 0500 INTEGER igroup(nplank) 5910c7e5d2 Oliv*0501 0502 C-- COMMON /DARWIN_DEPENDENT_TRAITS_r/ Dependent and constant (not read-in) parameters 0503 C normI :: [] normalization factor for non-Geider light curve 0504 C biovol :: [um^3] volume 0505 C qcarbon :: [mmol C/cell] cellular carbon content 0506 C biovol_bygroup :: [um^3] volume of types in each group 0507 C chl2cmin :: [mg Chl (mmol C)^-1] minimum Chl:C ratio (function of chl2cmax and alpha_mean) 0508 C alpha_mean :: [mmol C s-1 (uEin m^-2 s^-1)^-1 (mg Chl)^-1] mean initial slope of light curve (over wavebands) 8fbfd1f382 Oliv*0509 COMMON /DARWIN_DEPENDENT_TRAITS_r/ 0510 #ifndef DARWIN_ALLOW_GEIDER 0511 & normI, 0512 #endif 0513 & biovol, 0514 & qcarbon, 0515 & biovol_bygroup, 0516 & alpha_mean, 7e97ec2956 Oliv*0517 & chl2cmin 8fbfd1f382 Oliv*0518 #ifndef DARWIN_ALLOW_GEIDER 0519 _RL normI(nplank) 0520 #endif 0521 _RL biovol(nplank) 0522 _RL qcarbon(nplank) 0523 _RL biovol_bygroup(nplank,ngroup) 0524 _RL alpha_mean(nplank) 0525 _RL chl2cmin(nplank) 0526 0527 0528 #endif /* ALLOW_DARWIN */ 0529
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